Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0772714.1g.14a with 6 members (PDZ and LIM domain)

Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii /

... /

Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Primates / Haplorrhini / Simiiformes / Catarrhini /

Hominoidea /

Completeness score: 1.00

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This HOG has 33 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0772714.1g	294	174	PDZ and LIM domain
2	HOG:E0772714.1g.14a	276	70	PDZ and LIM domain
3	HOG:E0772714.1g.12b	187	38	PDZ and LIM domain
4	HOG:E0772714.1g.14a.14b	84	14	PDZ and LIM domain
5	HOG:E0537204.4b.5b	54	9	Pdz and lim domain protein
6	HOG:E0772714	36	565	PDZ and LIM domain
7	HOG:E0537204.4b.4b	18	6	Pdz and lim domain protein
8	HOG:E0831612	12	2	-
9	HOG:E0772714.1g.14a.13b	12	2	PDZ and LIM domain
10	HOG:E0772714.1g.12c	12	2	PDZ and LIM domain
11	HOG:E0537204.3a.3b	12	2	Pdz and lim domain protein
12	HOG:E0537204.3a	12	6	Pdz and lim domain protein
13	HOG:E0537204.3a.3a	11	2	Pdz and lim domain protein
14	HOG:E0772714.1a	8	10	PDZ and LIM domain
15	HOG:E0781553.1a	6	1	PDZ and LIM domain protein
16	HOG:E0772714.1g.14b	6	1	PDZ and LIM domain
17	HOG:E0772714.1g.13b	6	1	PDZ and LIM domain
18	HOG:E0772714.1g.12b.12b	6	1	PDZ and LIM domain
19	HOG:E0772714.1g.12b.12a	6	1	PDZ and LIM domain
20	HOG:E0772714.1g.12b.11b	6	1	PDZ and LIM domain
21	HOG:E0772714.1g.12b.11a	6	1	PDZ and LIM domain
22	HOG:E0772714.1g.12b.10b	6	1	PDZ and LIM domain
23	HOG:E0772714.1g.12b.10a	6	1	PDZ and LIM domain
24	HOG:E0772714.1g.12a.9b	6	1	PDZ and LIM domain
25	HOG:E0772714.1g.12a.9a	6	2	PDZ and LIM domain

Showing 1 to 25 of 33 rows rows per page